Sputnik : DNA microsatellite repeat search utility (Chris Abajian)

your e-mail
(

= required,

= conditionally required)

Sequence File (fasta or multifasta format) : please enter either :

the name of a file:
or the actual data here:

(sequence format)

Show all (even when there is no repeat) (-a)
Do not bother finding the canonical repeat unit (-x)
Max unit length (-u)
Min unit length (-v)
Points for a match (-m)
Points for a mis-match (-n)
Minimum score (-s)
Adjust scores for the first unit cell (-j)
Errors per 100 bases (-e)
Report score as percent perfection (-p)
fail score (-f)
Max degrade and still continue, in bases (-d)
Max recursion [0, 100] (0 ==> perfect only) (-r)
output this many bases flanking the repeat [0, 1000] (-F)
Min length of SSR to report (-L)

Max characters on an output line (-l)
Do not collapse unit cell to canonical strand (-z)

your e-mail

Some explanations about the options

Main parameters
enter either the name of a file or the actual data: if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button); OR you can type your data in the next area, or cut and paste it from another application.; (but not both)

Sequence format: The sequence will be automatically converted in the format needed for the program; providing you enter a sequence either:; in plain (raw) sequence format or in one of the following known formats:; IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW; You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:
database:accession.

Pise form generator version: 5.a (30 Oct 2009 13:37)